Motif IL_47132.1 Version IL_47132.1 of this group appears in releases 4.1 to 4.1

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5		6		7		8		9	break		10		11		12		13		14	1-14	2-6	3-8	4-7	6-12	7-11	9-10
1	IL_4KZD_005	4KZD	0.1272	2	Part of G-quadruplex	R	RNA (84-MER)	A	53	G	54	U	55	G	57	A	58	G	59	G	61	U	62	G	63	*	C	25	G	26	G	27	G	28	U	29	cWW	cHW		cHW	cHW	cHW	cWW
2	IL_8K7W_003	8K7W	0.0742	2		A	RNA (49-MER)	A	34	G	35	U	36	G	38	A	39	G	40	G	42	U	43	G	44	*	C	9	G	10	G	11	G	12	U	13	cWW	cHW	ntSW	cHW	cHW	cHW	cWW
3	IL_7L0Z_003	7L0Z	0.0690	2	Part of G-quadruplex	G	RNA (69-MER)	A	45	G	46	U	47	G	49	A	50	G	51	G	53	U	54	G	55	*	C	18	G	19	G	20	G	21	U	22	cWW	cHW		cHW	cHW	cHW	cWW
4	IL_4TS2_006	4TS2	0.0664	2	Part of G-quadruplex	Y+X	Spinach aptamer RNA, bimolecular construct	A	64	G	65	U	66	G	68	A	69	G	70	G	72	U	73	G	74	*	C	28	G	29	G	30	G	31	U	32	cWW	cHW	ntSW	cHW	cHW	cHW	cWW
5	IL_8K85_003	8K85	0.0000	2		B+A	RNA (56-MER)	A	40	G	41	U	42	G	44	U	45	G	46	G	48	U	49	G	50	*	C	10	G	11	G	12	G	13	U	14	cWW	cHW	ntSW	cHW	cHW	cHW	cWW
6	IL_8K85_010	8K85	0.0676	2		A+B	RNA (56-MER)	A	40	G	41	U	42	G	44	U	45	G	46	G	48	U	49	G	50	*	C	10	G	11	G	12	G	13	U	14	cWW	cHW	ntSW	cHW	cHW	cHW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
AGUAGAGUGUG*CGGGU	4
AGUAGUGUGUG*CGGGU	2

Non-Watson-Crick part of the motif

Sequence	Counts
GUAGAGUGU*GGG	4
GUAGUGUGU*GGG	2

Release history

Release	4.1
Date	2025-09-10
Status	New id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Part of G-quadruplex (3)
(3)
Basepair signature: cWW-cHW-R-L-cHW-cHW-cHW-L-cWW-R
Heat map statistics: Min 0.05 | Avg 0.08 | Max 0.16

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Coloring options: Nucleotide numbers

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