IL_9VMZ_008

3D structure

PDB id

9VMZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Broccoli aptamer in with BI

Experimental method

X-RAY DIFFRACTION

Resolution

2.44 Å

Loop

Sequence

CC*GUCG

Length

6 nucleotides

Bulged bases

9VMZ|1|A|C|32||||2_556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VMZ_008 not in the Motif Atlas

Geometric match to IL_8K7W_004

Geometric discrepancy: 0.0763

The information below is about IL_8K7W_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77710.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

9VMZ|1|A|C|14||||2_556
9VMZ|1|A|C|15||||2_556
*
9VMZ|1|A|G|30||||2_556
9VMZ|1|A|U|31||||2_556
9VMZ|1|A|C|32||||2_556
9VMZ|1|A|G|33||||2_556

Current chains

Chain A

RNA (49-MER)

Nearby chains