IL_9VTH_009

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UAUGAA*UGAAA

Length

11 nucleotides

Bulged bases

9VTH|1|11|U|66, 9VTH|1|11|A|68

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_009 not in the Motif Atlas

Homologous match to IL_9H3G_161

Geometric discrepancy: 0.1395

The information below is about IL_9H3G_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_21667.4

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

9VTH|1|11|U|64
9VTH|1|11|A|65
9VTH|1|11|U|66
9VTH|1|11|G|67
9VTH|1|11|A|68
9VTH|1|11|A|69
*
9VTH|1|11|U|83
9VTH|1|11|G|84
9VTH|1|11|A|85
9VTH|1|11|A|86
9VTH|1|11|A|87

Current chains

Chain 11

18S rRNA

Nearby chains

Chain SR

40S ribosomal protein S6

Chain SZ

40S ribosomal protein S24