IL_9VTH_011

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UAGU*AA

Length

6 nucleotides

Bulged bases

9VTH|1|11|A|115, 9VTH|1|11|G|116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_011 not in the Motif Atlas

Homologous match to IL_9PN5_150

Geometric discrepancy: 0.0798

The information below is about IL_9PN5_150

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71421.6

Basepair signature

cWW-cWW

Number of instances in this motif group

38

Unit IDs

9VTH|1|11|U|114
9VTH|1|11|A|115
9VTH|1|11|G|116
9VTH|1|11|U|117
*
9VTH|1|11|A|304
9VTH|1|11|A|305

Current chains

Chain 11

18S rRNA

Nearby chains

Chain SN

40S ribosomal protein S11

Chain SQ

40S ribosomal protein S4

Chain ST

40S ribosomal protein S8