IL_9VTH_014

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CCGUA*UAGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_014 not in the Motif Atlas

Geometric match to IL_9JA9_001

Geometric discrepancy: 0.3575

The information below is about IL_9JA9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71154.6

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

18

Unit IDs

9VTH|1|11|C|147
9VTH|1|11|C|148
9VTH|1|11|G|149
9VTH|1|11|U|150
9VTH|1|11|A|151
*
9VTH|1|11|U|159
9VTH|1|11|A|160
9VTH|1|11|G|161
9VTH|1|11|A|162
9VTH|1|11|G|163

Current chains

Chain 11

18S rRNA

Nearby chains

Chain SR

40S ribosomal protein S6

Chain SZ

40S ribosomal protein S24