IL_9VTH_022

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_022 not in the Motif Atlas

Homologous match to IL_9H3G_174

Geometric discrepancy: 0.1306

The information below is about IL_9H3G_174

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01372.4

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

9VTH|1|11|U|322
9VTH|1|11|U|323
9VTH|1|11|U|324
9VTH|1|11|C|325
9VTH|1|11|G|326
9VTH|1|11|A|327
*
9VTH|1|11|U|349
9VTH|1|11|G|350

Current chains

Chain 11

18S rRNA

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA

Chain LW

Ribosomal protein L19

Chain SN

40S ribosomal protein S11

Chain ST

40S ribosomal protein S8