IL_9VTH_023
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GAG*CGAUUC
- Length
- 9 nucleotides
- Bulged bases
- 9VTH|1|11|U|384
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VTH_023 not in the Motif Atlas
- Homologous match to IL_9H3G_175
- Geometric discrepancy: 0.1057
- The information below is about IL_9H3G_175
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_93336.4
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 6
Unit IDs
9VTH|1|11|G|367
9VTH|1|11|A|368
9VTH|1|11|G|369
*
9VTH|1|11|C|380
9VTH|1|11|G|381
9VTH|1|11|A|382
9VTH|1|11|U|383
9VTH|1|11|U|384
9VTH|1|11|C|385
Current chains
- Chain 11
- 18S rRNA
Nearby chains
- Chain SC
- 40S ribosomal protein S9-2-like
- Chain SJ
- 40S ribosomal protein S23
- Chain SQ
- 40S ribosomal protein S4
Coloring options: