IL_9VTH_030

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GAG*CGAGGAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_030 not in the Motif Atlas

Homologous match to IL_9H3G_182

Geometric discrepancy: 0.1723

The information below is about IL_9H3G_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02511.3

Basepair signature

cWW-tSH-L-cWW-L-L-R-L

Number of instances in this motif group

4

Unit IDs

9VTH|1|11|G|517
9VTH|1|11|A|518
9VTH|1|11|G|519
*
9VTH|1|11|C|539
9VTH|1|11|G|540
9VTH|1|11|A|541
9VTH|1|11|G|542
9VTH|1|11|G|543
9VTH|1|11|A|544
9VTH|1|11|U|545
9VTH|1|11|C|546

Current chains

Chain 11

18S rRNA

Nearby chains

Chain SC

40S ribosomal protein S9-2-like

Chain Se

40S ribosomal protein S30