IL_9VTH_037

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

9VTH|1|11|A|622

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_037 not in the Motif Atlas

Homologous match to IL_9H3G_189

Geometric discrepancy: 0.0896

The information below is about IL_9H3G_189

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.4

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

9VTH|1|11|G|619
9VTH|1|11|U|620
9VTH|1|11|U|621
9VTH|1|11|A|622
9VTH|1|11|A|623
9VTH|1|11|A|624
9VTH|1|11|A|625
*
9VTH|1|11|U|1107
9VTH|1|11|C|1108

Current chains

Chain 11

18S rRNA

Nearby chains

Chain SJ

40S ribosomal protein S23

Chain Sb

40S ribosomal protein S26