IL_9VTH_041

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UUU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_041 not in the Motif Atlas

Homologous match to IL_9PN5_179

Geometric discrepancy: 0.1723

The information below is about IL_9PN5_179

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

81

Unit IDs

9VTH|1|11|U|752
9VTH|1|11|U|753
9VTH|1|11|U|754
*
9VTH|1|11|A|803
9VTH|1|11|U|804
9VTH|1|11|G|805

Current chains

Chain 11

18S rRNA

Nearby chains

Chain SF

Small ribosomal subunit protein uS8c

Chain SN

40S ribosomal protein S11

Chain SQ

40S ribosomal protein S4