IL_9VTH_042
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GAAGAAAUU*ACAUUAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VTH_042 not in the Motif Atlas
- Homologous match to IL_9H3G_194
- Geometric discrepancy: 0.2154
- The information below is about IL_9H3G_194
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_59049.5
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
9VTH|1|11|G|755
9VTH|1|11|A|756
9VTH|1|11|A|757
9VTH|1|11|G|758
9VTH|1|11|A|759
9VTH|1|11|A|760
9VTH|1|11|A|761
9VTH|1|11|U|762
9VTH|1|11|U|763
*
9VTH|1|11|A|795
9VTH|1|11|C|796
9VTH|1|11|A|797
9VTH|1|11|U|798
9VTH|1|11|U|799
9VTH|1|11|A|800
9VTH|1|11|G|801
9VTH|1|11|C|802
Current chains
- Chain 11
- 18S rRNA
Nearby chains
- Chain SC
- 40S ribosomal protein S9-2-like
- Chain SF
- Small ribosomal subunit protein uS8c
- Chain SN
- 40S ribosomal protein S11
- Chain SQ
- 40S ribosomal protein S4
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