IL_9VTH_046

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

9VTH|1|11|U|962

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_046 not in the Motif Atlas

Homologous match to IL_9PN5_183

Geometric discrepancy: 0.0645

The information below is about IL_9PN5_183

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9VTH|1|11|G|871
9VTH|1|11|A|872
9VTH|1|11|C|873
*
9VTH|1|11|G|960
9VTH|1|11|U|961
9VTH|1|11|U|962
9VTH|1|11|U|963

Current chains

Chain 11

18S rRNA

Nearby chains

Chain SM

40S ribosomal protein S13

Chain Sc

40S ribosomal protein S27