IL_9VTH_048

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

9VTH|1|11|G|879

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_048 not in the Motif Atlas

Homologous match to IL_9PN5_185

Geometric discrepancy: 0.0739

The information below is about IL_9PN5_185

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

42

Unit IDs

9VTH|1|11|C|877
9VTH|1|11|G|878
9VTH|1|11|G|879
9VTH|1|11|G|880
9VTH|1|11|G|881
*
9VTH|1|11|C|953
9VTH|1|11|A|954
9VTH|1|11|A|955
9VTH|1|11|G|956

Current chains

Chain 11

18S rRNA

Nearby chains

Chain SM

40S ribosomal protein S13

Chain SP

Small ribosomal subunit protein eS1

Chain Sb

40S ribosomal protein S26