IL_9VTH_055

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AUG*CU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_055 not in the Motif Atlas

Homologous match to IL_9H3G_207

Geometric discrepancy: 0.1363

The information below is about IL_9H3G_207

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

59

Unit IDs

9VTH|1|11|A|1054
9VTH|1|11|U|1055
9VTH|1|11|G|1056
*
9VTH|1|11|C|1069
9VTH|1|11|U|1070

Current chains

Chain 11

18S rRNA

Nearby chains

Chain SA

Small ribosomal subunit protein uS2

Chain SP

Small ribosomal subunit protein eS1