IL_9VTH_058

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

9VTH|1|11|A|1637

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_058 not in the Motif Atlas

Homologous match to IL_9PN5_195

Geometric discrepancy: 0.0918

The information below is about IL_9PN5_195

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

188

Unit IDs

9VTH|1|11|G|1149
9VTH|1|11|A|1150
*
9VTH|1|11|U|1636
9VTH|1|11|A|1637
9VTH|1|11|C|1638

Current chains

Chain 11

18S rRNA

Nearby chains

Chain SD

Small ribosomal subunit protein uS5

Chain Sb

40S ribosomal protein S26