IL_9VTH_061

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CCU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_061 not in the Motif Atlas

Homologous match to IL_9H3G_213

Geometric discrepancy: 0.1038

The information below is about IL_9H3G_213

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9VTH|1|11|C|1176
9VTH|1|11|C|1177
9VTH|1|11|U|1178
*
9VTH|1|11|G|1469
9VTH|1|11|C|1470
9VTH|1|11|G|1471

Current chains

Chain 11

18S rRNA

Nearby chains

Chain 16

Transfer RNA; tRNA

Chain SG

40S ribosomal protein S16

Chain SK

40S ribosomal protein S18

Chain SO

40S ribosomal protein S15-like

Chain SX

40S ribosomal protein S19-3-like