IL_9VTH_067

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

9VTH|1|11|C|1277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_067 not in the Motif Atlas

Geometric match to IL_9PN5_204

Geometric discrepancy: 0.0788

The information below is about IL_9PN5_204

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82453.4

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

9VTH|1|11|U|1275
9VTH|1|11|G|1276
9VTH|1|11|C|1277
9VTH|1|11|A|1278
9VTH|1|11|U|1279
*
9VTH|1|11|A|1441
9VTH|1|11|U|1442
9VTH|1|11|G|1443

Current chains

Chain 11

18S rRNA

Nearby chains

Chain SB

30S ribosomal protein S3, chloroplastic

Chain SH

40S ribosomal protein S20-2

Chain SL

40S ribosomal protein S29

Chain SU

40S ribosomal protein S10-1