IL_9VTH_068
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 9VTH|1|11|C|1277, 9VTH|1|11|U|1437, 9VTH|1|11|G|1440
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VTH_068 not in the Motif Atlas
- Homologous match to IL_9PN5_206
- Geometric discrepancy: 0.0926
- The information below is about IL_9PN5_206
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9VTH|1|11|U|1275
9VTH|1|11|G|1276
9VTH|1|11|C|1277
9VTH|1|11|A|1278
9VTH|1|11|U|1279
9VTH|1|11|G|1280
9VTH|1|11|G|1281
*
9VTH|1|11|U|1435
9VTH|1|11|C|1436
9VTH|1|11|U|1437
9VTH|1|11|G|1438
9VTH|1|11|U|1439
9VTH|1|11|G|1440
9VTH|1|11|A|1441
9VTH|1|11|U|1442
9VTH|1|11|G|1443
Current chains
- Chain 11
- 18S rRNA
Nearby chains
- Chain SB
- 30S ribosomal protein S3, chloroplastic
- Chain SH
- 40S ribosomal protein S20-2
- Chain SL
- 40S ribosomal protein S29
- Chain SU
- 40S ribosomal protein S10-1
Coloring options: