IL_9VTH_070
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CG*CAG
- Length
- 5 nucleotides
- Bulged bases
- 9VTH|1|11|A|1432
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VTH_070 not in the Motif Atlas
- Homologous match to IL_9PN5_209
- Geometric discrepancy: 0.1353
- The information below is about IL_9PN5_209
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_14190.5
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 188
Unit IDs
9VTH|1|11|C|1283
9VTH|1|11|G|1284
*
9VTH|1|11|C|1431
9VTH|1|11|A|1432
9VTH|1|11|G|1433
Current chains
- Chain 11
- 18S rRNA
Nearby chains
- Chain SB
- 30S ribosomal protein S3, chloroplastic
- Chain SD
- Small ribosomal subunit protein uS5
- Chain SG
- 40S ribosomal protein S16
- Chain SH
- 40S ribosomal protein S20-2
- Chain SL
- 40S ribosomal protein S29
Coloring options: