IL_9VTH_071

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UGG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_071 not in the Motif Atlas

Homologous match to IL_9H3G_223

Geometric discrepancy: 0.087

The information below is about IL_9H3G_223

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.5

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

67

Unit IDs

9VTH|1|11|U|1293
9VTH|1|11|G|1294
9VTH|1|11|G|1295
*
9VTH|1|11|C|1326
9VTH|1|11|G|1327
9VTH|1|11|A|1328

Current chains

Chain 11

18S rRNA

Nearby chains

Chain SA

Small ribosomal subunit protein uS2

Chain SB

30S ribosomal protein S3, chloroplastic

Chain SD

Small ribosomal subunit protein uS5

Chain SW

40S ribosomal protein S17-like