IL_9VTH_073

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CUGC*GAG

Length

7 nucleotides

Bulged bases

9VTH|1|11|U|1343

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_073 not in the Motif Atlas

Homologous match to IL_9H3G_225

Geometric discrepancy: 0.1336

The information below is about IL_9H3G_225

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9VTH|1|11|C|1342
9VTH|1|11|U|1343
9VTH|1|11|G|1344
9VTH|1|11|C|1345
*
9VTH|1|11|G|1388
9VTH|1|11|A|1389
9VTH|1|11|G|1390

Current chains

Chain 11

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S16

Chain SH

40S ribosomal protein S20-2

Chain SW

40S ribosomal protein S17-like