IL_9VTH_078
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- AUUCAACGA*UUUGAAAUU
- Length
- 18 nucleotides
- Bulged bases
- 9VTH|1|11|U|1528
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VTH_078 not in the Motif Atlas
- Homologous match to IL_9H3G_230
- Geometric discrepancy: 0.1023
- The information below is about IL_9H3G_230
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9VTH|1|11|A|1484
9VTH|1|11|U|1485
9VTH|1|11|U|1486
9VTH|1|11|C|1487
9VTH|1|11|A|1488
9VTH|1|11|A|1489
9VTH|1|11|C|1490
9VTH|1|11|G|1491
9VTH|1|11|A|1492
*
9VTH|1|11|U|1526
9VTH|1|11|U|1527
9VTH|1|11|U|1528
9VTH|1|11|G|1529
9VTH|1|11|A|1530
9VTH|1|11|A|1531
9VTH|1|11|A|1532
9VTH|1|11|U|1533
9VTH|1|11|U|1534
Current chains
- Chain 11
- 18S rRNA
Nearby chains
- Chain SB
- 30S ribosomal protein S3, chloroplastic
- Chain SE
- 40S ribosomal protein S5
- Chain SG
- 40S ribosomal protein S16
- Chain SH
- 40S ribosomal protein S20-2
- Chain SL
- 40S ribosomal protein S29
- Chain SX
- 40S ribosomal protein S19-3-like
- Chain Sa
- 40S ribosomal protein S25
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