IL_9VTH_083
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GCCC*GUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VTH_083 not in the Motif Atlas
- Homologous match to IL_9H3G_234
- Geometric discrepancy: 0.0868
- The information below is about IL_9H3G_234
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_25873.5
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
9VTH|1|11|G|1644
9VTH|1|11|C|1645
9VTH|1|11|C|1646
9VTH|1|11|C|1647
*
9VTH|1|11|G|1768
9VTH|1|11|U|1769
9VTH|1|11|A|1770
9VTH|1|11|A|1771
9VTH|1|11|C|1772
Current chains
- Chain 11
- 18S rRNA
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
- Chain 15
- RNA (5'-R(P*AP*CP*AP*AP*UP*G)-3')
- Chain 16
- Transfer RNA; tRNA
- Chain Lo
- 60s ribosomal protein l41-like
Coloring options: