IL_9VTH_088

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UUG*UA

Length

5 nucleotides

Bulged bases

9VTH|1|11|U|1663

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_088 not in the Motif Atlas

Homologous match to IL_9PN5_226

Geometric discrepancy: 0.1182

The information below is about IL_9PN5_226

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.9

Basepair signature

cWW-L-cWW

Number of instances in this motif group

193

Unit IDs

9VTH|1|11|U|1662
9VTH|1|11|U|1663
9VTH|1|11|G|1664
*
9VTH|1|11|U|1751
9VTH|1|11|A|1752

Current chains

Chain 11

18S rRNA

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA

Chain LH

60S ribosomal protein L23

Chain Lo

60s ribosomal protein l41-like

Chain SJ

40S ribosomal protein S23