IL_9VTH_092

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_092 not in the Motif Atlas

Homologous match to IL_9H3G_243

Geometric discrepancy: 0.1018

The information below is about IL_9H3G_243

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15190.5

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

29

Unit IDs

9VTH|1|11|C|1684
9VTH|1|11|G|1685
9VTH|1|11|G|1686
9VTH|1|11|A|1687
9VTH|1|11|U|1688
*
9VTH|1|11|A|1727
9VTH|1|11|G|1728
9VTH|1|11|A|1729
9VTH|1|11|A|1730
9VTH|1|11|G|1731

Current chains

Chain 11

18S rRNA

Nearby chains

Chain La

60S ribosomal protein L24

Chain SR

40S ribosomal protein S6

Chain ST

40S ribosomal protein S8