IL_9VTH_094
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CUAACGCA*UUAAGCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VTH_094 not in the Motif Atlas
- Geometric match to IL_9H3G_148
- Geometric discrepancy: 0.0939
- The information below is about IL_9H3G_148
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_01750.1
- Basepair signature
- cWW-cWW-L-cSW-L-cSW-L-R-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
9VTH|1|12|C|20
9VTH|1|12|U|21
9VTH|1|12|A|22
9VTH|1|12|A|23
9VTH|1|12|C|24
9VTH|1|12|G|25
9VTH|1|12|C|26
9VTH|1|12|A|27
*
9VTH|1|12|U|52
9VTH|1|12|U|53
9VTH|1|12|A|54
9VTH|1|12|A|55
9VTH|1|12|G|56
9VTH|1|12|C|57
9VTH|1|12|G|58
Current chains
- Chain 12
- 5S rRNA
Nearby chains
- Chain LE
- 60S ribosomal protein L11-1
- Chain LK
- 60S ribosomal protein L5-like
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