IL_9VTH_097
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GAGUAGUAC*GGAAGUCC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VTH_097 not in the Motif Atlas
- Homologous match to IL_9H3G_151
- Geometric discrepancy: 0.0833
- The information below is about IL_9H3G_151
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9VTH|1|12|G|70
9VTH|1|12|A|71
9VTH|1|12|G|72
9VTH|1|12|U|73
9VTH|1|12|A|74
9VTH|1|12|G|75
9VTH|1|12|U|76
9VTH|1|12|A|77
9VTH|1|12|C|78
*
9VTH|1|12|G|98
9VTH|1|12|G|99
9VTH|1|12|A|100
9VTH|1|12|A|101
9VTH|1|12|G|102
9VTH|1|12|U|103
9VTH|1|12|C|104
9VTH|1|12|C|105
Current chains
- Chain 12
- 5S rRNA
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
- Chain LJ
- 60S ribosomal protein L10
- Chain LK
- 60S ribosomal protein L5-like
- Chain LP
- 60S ribosomal protein L7-4-like
- Chain LX
- 60S ribosomal protein L18a
- Chain LY
- 60S ribosomal protein L21-1-like
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