IL_9VTH_103

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CGAAG*CCGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_103 not in the Motif Atlas

Homologous match to IL_9H3G_004

Geometric discrepancy: 0.0981

The information below is about IL_9H3G_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87767.5

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

9VTH|1|13|C|122
9VTH|1|13|G|123
9VTH|1|13|A|124
9VTH|1|13|A|125
9VTH|1|13|G|126
*
9VTH|1|13|C|135
9VTH|1|13|C|136
9VTH|1|13|G|137
9VTH|1|13|A|138
9VTH|1|13|G|139

Current chains

Chain 13

5.8S rRNA

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA

Chain LM

Large ribosomal subunit protein uL23