IL_9VTH_106
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CAC*GCG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VTH_106 not in the Motif Atlas
- Homologous match to IL_9H3G_007
- Geometric discrepancy: 0.197
- The information below is about IL_9H3G_007
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.7
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 240
Unit IDs
9VTH|1|13|C|159
9VTH|1|13|A|160
9VTH|1|13|C|161
*
9VTH|1|14|G|1
9VTH|1|14|C|2
9VTH|1|14|G|3
Current chains
- Chain 13
- 5.8S rRNA
- Chain 14
- 25S rRNA
Nearby chains
- Chain LM
- Large ribosomal subunit protein uL23
- Chain LR
- 60S ribosomal protein L7a
Coloring options: