IL_9VTH_107
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CC*GAG
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VTH_107 not in the Motif Atlas
- Homologous match to IL_9PN5_003
- Geometric discrepancy: 0.0725
- The information below is about IL_9PN5_003
- Detailed Annotation
- Single stack bend
- Broad Annotation
- No text annotation
- Motif group
- IL_15011.6
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 59
Unit IDs
9VTH|1|14|C|25
9VTH|1|14|C|26
*
9VTH|1|14|G|54
9VTH|1|14|A|55
9VTH|1|14|G|56
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain 13
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LO
- 60S ribosomal protein L35-like
- Chain LS
- 60S ribosomal protein L13
- Chain LU
- Ribosomal protein L15
- Chain Lk
- Ribosomal protein L37
Coloring options: