IL_9VTH_112

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UCC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_112 not in the Motif Atlas

Homologous match to IL_9H3G_013

Geometric discrepancy: 0.1351

The information below is about IL_9H3G_013

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.11

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

44

Unit IDs

9VTH|1|14|U|162
9VTH|1|14|C|163
9VTH|1|14|C|164
*
9VTH|1|14|G|252
9VTH|1|14|G|253

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LO

60S ribosomal protein L35-like

Chain LS

60S ribosomal protein L13