IL_9VTH_123

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUG*CAUC

Length

7 nucleotides

Bulged bases

9VTH|1|14|A|605

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_123 not in the Motif Atlas

Homologous match to IL_9H3G_026

Geometric discrepancy: 0.2225

The information below is about IL_9H3G_026

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

81

Unit IDs

9VTH|1|14|G|595
9VTH|1|14|U|596
9VTH|1|14|G|597
*
9VTH|1|14|C|604
9VTH|1|14|A|605
9VTH|1|14|U|606
9VTH|1|14|C|607

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LD

60S ribosomal protein L4-like

Chain LP

60S ribosomal protein L7-4-like

Chain LQ

60S ribosomal protein L6-like isoform X1