IL_9VTH_131
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 9VTH|1|14|A|943, 9VTH|1|14|G|947
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VTH_131 not in the Motif Atlas
- Homologous match to IL_9PN5_027
- Geometric discrepancy: 0.0656
- The information below is about IL_9PN5_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_73855.4
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
9VTH|1|14|G|815
9VTH|1|14|A|816
9VTH|1|14|A|817
9VTH|1|14|A|818
9VTH|1|14|G|819
*
9VTH|1|14|C|941
9VTH|1|14|U|942
9VTH|1|14|A|943
9VTH|1|14|G|944
9VTH|1|14|U|945
9VTH|1|14|A|946
9VTH|1|14|G|947
9VTH|1|14|C|948
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain LD
- 60S ribosomal protein L4-like
- Chain LI
- 60s ribosomal protein l27a-3
- Chain LS
- 60S ribosomal protein L13
- Chain LU
- Ribosomal protein L15
- Chain Lk
- Ribosomal protein L37
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