IL_9VTH_134
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CGAAG*UGGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VTH_134 not in the Motif Atlas
- Homologous match to IL_9PN5_030
- Geometric discrepancy: 0.0708
- The information below is about IL_9PN5_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_15190.5
- Basepair signature
- cWW-tSH-tHS-tHS-cWW
- Number of instances in this motif group
- 29
Unit IDs
9VTH|1|14|C|844
9VTH|1|14|G|845
9VTH|1|14|A|846
9VTH|1|14|A|847
9VTH|1|14|G|848
*
9VTH|1|14|U|865
9VTH|1|14|G|866
9VTH|1|14|G|867
9VTH|1|14|A|868
9VTH|1|14|G|869
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain LB
- 60S ribosomal protein L8-like
- Chain LW
- Ribosomal protein L19
- Chain Lq
- 60S ribosomal protein L37a
Coloring options: