IL_9VTH_137
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GGG*UAAUC
- Length
- 8 nucleotides
- Bulged bases
- 9VTH|1|14|G|918, 9VTH|1|14|A|930, 9VTH|1|14|A|931, 9VTH|1|14|U|932
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VTH_137 not in the Motif Atlas
- Homologous match to IL_9PN5_033
- Geometric discrepancy: 0.1192
- The information below is about IL_9PN5_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_89509.4
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 11
Unit IDs
9VTH|1|14|G|917
9VTH|1|14|G|918
9VTH|1|14|G|919
*
9VTH|1|14|U|929
9VTH|1|14|A|930
9VTH|1|14|A|931
9VTH|1|14|U|932
9VTH|1|14|C|933
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain LB
- 60S ribosomal protein L8-like
- Chain LL
- 60S ribosomal protein L17-1 isoform X2
- Chain LU
- Ribosomal protein L15
- Chain Lk
- Ribosomal protein L37
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