IL_9VTH_138
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- UUU*AUA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VTH_138 not in the Motif Atlas
- Homologous match to IL_9H3G_040
- Geometric discrepancy: 0.097
- The information below is about IL_9H3G_040
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_71625.6
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 81
Unit IDs
9VTH|1|14|U|964
9VTH|1|14|U|965
9VTH|1|14|U|966
*
9VTH|1|14|A|975
9VTH|1|14|U|976
9VTH|1|14|A|977
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain LI
- 60s ribosomal protein l27a-3
- Chain LS
- 60S ribosomal protein L13
- Chain LV
- 60S ribosomal protein L18-2
- Chain LY
- 60S ribosomal protein L21-1-like
- Chain Ld
- 60S ribosomal protein L29
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