IL_9VTH_146

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AGA*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_146 not in the Motif Atlas

Homologous match to IL_9PN5_041

Geometric discrepancy: 0.0731

The information below is about IL_9PN5_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9VTH|1|14|A|1021
9VTH|1|14|G|1022
9VTH|1|14|A|1023
*
9VTH|1|14|U|1051
9VTH|1|14|A|1052
9VTH|1|14|U|1053

Current chains

Chain 14

25S rRNA

Nearby chains

Chain 12

5S ribosomal RNA; 5S rRNA

Chain LJ

60S ribosomal protein L10

Chain LK

60S ribosomal protein L5-like