IL_9VTH_148

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UGC*GA

Length

5 nucleotides

Bulged bases

9VTH|1|14|G|1087

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_148 not in the Motif Atlas

Homologous match to IL_9AXU_043

Geometric discrepancy: 0.0847

The information below is about IL_9AXU_043

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

83

Unit IDs

9VTH|1|14|U|1086
9VTH|1|14|G|1087
9VTH|1|14|C|1088
*
9VTH|1|14|G|1095
9VTH|1|14|A|1096

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LK

60S ribosomal protein L5-like

Chain LY

60S ribosomal protein L21-1-like

Chain Ld

60S ribosomal protein L29