IL_9VTH_150

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UUU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_150 not in the Motif Atlas

Homologous match to IL_9H3G_053

Geometric discrepancy: 0.0897

The information below is about IL_9H3G_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9VTH|1|14|U|1134
9VTH|1|14|U|1135
9VTH|1|14|U|1136
*
9VTH|1|14|A|1144
9VTH|1|14|G|1145
9VTH|1|14|A|1146

Current chains

Chain 14

25S rRNA

Nearby chains

Chain 12

5S ribosomal RNA; 5S rRNA

Chain LJ

60S ribosomal protein L10

Chain Ld

60S ribosomal protein L29