IL_9VTH_153
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CUG*CG
- Length
- 5 nucleotides
- Bulged bases
- 9VTH|1|14|U|1192
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VTH_153 not in the Motif Atlas
- Homologous match to IL_9H3G_056
- Geometric discrepancy: 0.0951
- The information below is about IL_9H3G_056
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_97561.9
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 193
Unit IDs
9VTH|1|14|C|1191
9VTH|1|14|U|1192
9VTH|1|14|G|1193
*
9VTH|1|14|C|1336
9VTH|1|14|G|1337
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain LG
- 60S ribosomal protein L13a-4
- Chain LP
- 60S ribosomal protein L7-4-like
- Chain LT
- 60S ribosomal protein L14-1
- Chain LX
- 60S ribosomal protein L18a
- Chain Lh
- 60S ribosomal protein L35a-3-like
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