IL_9VTH_155
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GAUCCCACAAAG*CGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 9VTH|1|14|U|1208, 9VTH|1|14|A|1314, 9VTH|1|14|U|1317, 9VTH|1|14|G|1318
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VTH_155 not in the Motif Atlas
- Homologous match to IL_9PN5_050
- Geometric discrepancy: 0.0955
- The information below is about IL_9PN5_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_34501.4
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW
- Number of instances in this motif group
- 6
Unit IDs
9VTH|1|14|G|1206
9VTH|1|14|A|1207
9VTH|1|14|U|1208
9VTH|1|14|C|1209
9VTH|1|14|C|1210
9VTH|1|14|C|1211
9VTH|1|14|A|1212
9VTH|1|14|C|1213
9VTH|1|14|A|1214
9VTH|1|14|A|1215
9VTH|1|14|A|1216
9VTH|1|14|G|1217
*
9VTH|1|14|C|1311
9VTH|1|14|G|1312
9VTH|1|14|A|1313
9VTH|1|14|A|1314
9VTH|1|14|A|1315
9VTH|1|14|A|1316
9VTH|1|14|U|1317
9VTH|1|14|G|1318
9VTH|1|14|G|1319
9VTH|1|14|A|1320
9VTH|1|14|U|1321
9VTH|1|14|G|1322
9VTH|1|14|G|1323
9VTH|1|14|C|1324
9VTH|1|14|G|1325
9VTH|1|14|C|1326
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain 12
- 5S ribosomal RNA; 5S rRNA
- Chain LC
- 60S ribosomal protein L3
- Chain LG
- 60S ribosomal protein L13a-4
- Chain LJ
- 60S ribosomal protein L10
- Chain LP
- 60S ribosomal protein L7-4-like
- Chain Lh
- 60S ribosomal protein L35a-3-like
- Chain Ln
- Ubiquitin-60S ribosomal protein L40
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