IL_9VTH_156

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

9VTH|1|14|U|1220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_156 not in the Motif Atlas

Homologous match to IL_8GLP_081

Geometric discrepancy: 0.0827

The information below is about IL_8GLP_081

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.9

Basepair signature

cWW-L-cWW

Number of instances in this motif group

193

Unit IDs

9VTH|1|14|G|1219
9VTH|1|14|U|1220
9VTH|1|14|G|1221
*
9VTH|1|14|C|1308
9VTH|1|14|C|1309

Current chains

Chain 14

25S rRNA

Nearby chains

Chain 12

5S ribosomal RNA; 5S rRNA

Chain LF

60S ribosomal protein L9-1

Chain LX

60S ribosomal protein L18a

Chain Ln

Ubiquitin-60S ribosomal protein L40