IL_9VTH_159

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CGC*GGUG

Length

7 nucleotides

Bulged bases

9VTH|1|14|G|1440

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_159 not in the Motif Atlas

Homologous match to IL_9H3G_061

Geometric discrepancy: 0.0936

The information below is about IL_9H3G_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84227.2

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

20

Unit IDs

9VTH|1|14|C|1388
9VTH|1|14|G|1389
9VTH|1|14|C|1390
*
9VTH|1|14|G|1439
9VTH|1|14|G|1440
9VTH|1|14|U|1441
9VTH|1|14|G|1442

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LD

60S ribosomal protein L4-like

Chain LI

60s ribosomal protein l27a-3

Chain Lc

60S ribosomal protein L28-1-like

Chain Lg

60S ribosomal protein L32-1