IL_9VTH_160
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CUGCAAAAC*GCGGAG
- Length
- 15 nucleotides
- Bulged bases
- 9VTH|1|14|C|1402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VTH_160 not in the Motif Atlas
- Homologous match to IL_9H3G_062
- Geometric discrepancy: 0.0722
- The information below is about IL_9H3G_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9VTH|1|14|C|1399
9VTH|1|14|U|1400
9VTH|1|14|G|1401
9VTH|1|14|C|1402
9VTH|1|14|A|1403
9VTH|1|14|A|1404
9VTH|1|14|A|1405
9VTH|1|14|A|1406
9VTH|1|14|C|1407
*
9VTH|1|14|G|1425
9VTH|1|14|C|1426
9VTH|1|14|G|1427
9VTH|1|14|G|1428
9VTH|1|14|A|1429
9VTH|1|14|G|1430
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain 13
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LD
- 60S ribosomal protein L4-like
- Chain LN
- 60S ribosomal protein L26-1
- Chain Lg
- 60S ribosomal protein L32-1
Coloring options: