IL_9VTH_161

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UUG*UG

Length

5 nucleotides

Bulged bases

9VTH|1|14|U|1410

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_161 not in the Motif Atlas

Homologous match to IL_9H3G_063

Geometric discrepancy: 0.2124

The information below is about IL_9H3G_063

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

188

Unit IDs

9VTH|1|14|U|1409
9VTH|1|14|U|1410
9VTH|1|14|G|1411
*
9VTH|1|14|U|1422
9VTH|1|14|G|1423

Current chains

Chain 14

25S rRNA

Nearby chains

Chain 13

5.8S ribosomal RNA; 5.8S rRNA

Chain Lc

60S ribosomal protein L28-1-like

Chain Lg

60S ribosomal protein L32-1