IL_9VTH_163
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GGUU*AC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VTH_163 not in the Motif Atlas
- Geometric match to IL_9H3G_065
- Geometric discrepancy: 0.0809
- The information below is about IL_9H3G_065
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_74641.5
- Basepair signature
- cWW-tSH-cWW-L
- Number of instances in this motif group
- 37
Unit IDs
9VTH|1|14|G|1503
9VTH|1|14|G|1504
9VTH|1|14|U|1505
9VTH|1|14|U|1506
*
9VTH|1|14|A|1841
9VTH|1|14|C|1842
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain 13
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LM
- Large ribosomal subunit protein uL23
- Chain Li
- Large ribosomal subunit protein eL34
- Chain Lk
- Ribosomal protein L37
- Chain Lm
- 60S ribosomal protein L39-3
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