IL_9VTH_168

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GG*CGAC

Length

6 nucleotides

Bulged bases

9VTH|1|14|A|1564

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_168 not in the Motif Atlas

Homologous match to IL_9H3G_070

Geometric discrepancy: 0.1514

The information below is about IL_9H3G_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48076.11

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

44

Unit IDs

9VTH|1|14|G|1552
9VTH|1|14|G|1553
*
9VTH|1|14|C|1562
9VTH|1|14|G|1563
9VTH|1|14|A|1564
9VTH|1|14|C|1565

Current chains

Chain 14

25S rRNA

Nearby chains

Chain 13

5.8S ribosomal RNA; 5.8S rRNA

Chain LR

60S ribosomal protein L7a

Chain LU

Ribosomal protein L15