IL_9VTH_171

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUUG*CGAGUGC

Length

11 nucleotides

Bulged bases

9VTH|1|14|U|1633, 9VTH|1|14|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_171 not in the Motif Atlas

Homologous match to IL_9H3G_073

Geometric discrepancy: 0.2642

The information below is about IL_9H3G_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9VTH|1|14|G|1632
9VTH|1|14|U|1633
9VTH|1|14|U|1634
9VTH|1|14|G|1635
*
9VTH|1|14|C|1817
9VTH|1|14|G|1818
9VTH|1|14|A|1819
9VTH|1|14|G|1820
9VTH|1|14|U|1821
9VTH|1|14|G|1822
9VTH|1|14|C|1823

Current chains

Chain 14

25S rRNA

Nearby chains

Chain Lb

60S ribosomal protein L27