IL_9VTH_176

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GAA*UGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_176 not in the Motif Atlas

Homologous match to IL_9H3G_078

Geometric discrepancy: 0.1226

The information below is about IL_9H3G_078

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9VTH|1|14|G|1679
9VTH|1|14|A|1680
9VTH|1|14|A|1681
*
9VTH|1|14|U|1695
9VTH|1|14|G|1696
9VTH|1|14|U|1697

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LW

Ribosomal protein L19

Chain LZ

Large ribosomal subunit protein eL22

Chain Li

Large ribosomal subunit protein eL34