IL_9VTH_177

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UUAAC*GGAAGA

Length

11 nucleotides

Bulged bases

9VTH|1|14|G|1756

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_177 not in the Motif Atlas

Homologous match to IL_9H3G_079

Geometric discrepancy: 0.0842

The information below is about IL_9H3G_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25943.3

Basepair signature

cWW-tWH-tHH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9VTH|1|14|U|1698
9VTH|1|14|U|1699
9VTH|1|14|A|1700
9VTH|1|14|A|1701
9VTH|1|14|C|1702
*
9VTH|1|14|G|1752
9VTH|1|14|G|1753
9VTH|1|14|A|1754
9VTH|1|14|A|1755
9VTH|1|14|G|1756
9VTH|1|14|A|1757

Current chains

Chain 14

25S rRNA

Nearby chains

Chain Li

Large ribosomal subunit protein eL34

Chain Ll

60S ribosomal protein L38